YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78509459, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	18	0.58
Transmembrane Helix	19	42	0.88
Non-Cytoplasmic	43	49	0.56
Transmembrane Helix	50	73	0.86
Cytoplasmic	74	86	0.58
Transmembrane Helix	87	111	0.73
Non-Cytoplasmic	112	135	0.47
Transmembrane Helix	136	160	0.81
Cytoplasmic	161	167	0.37
Transmembrane Helix	168	192	0.85
Non-Cytoplasmic	193	233	0.43
Transmembrane Helix	234	255	0.91
Cytoplasmic	256	266	0.40
Transmembrane Helix	267	291	0.81
Non-Cytoplasmic	292	300	0.39
Transmembrane Helix	301	326	0.79
Cytoplasmic	327	344	0.42
Transmembrane Helix	345	377	0.60
Non-Cytoplasmic	378	380	0.35
Transmembrane Helix	381	399	0.53
Cytoplasmic	400	418	0.57
Transmembrane Helix	419	443	0.85
Non-Cytoplasmic	444	447	0.60

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILMEFIVVL GCLLLGTRYG GMGLGLISGI GLFLLTFVFG LAPGQPPVQV MLTILAVIGC  60
   61 ASVLQTAGGL NVMMQFAERL LRRHPQYITI LAPLTTWTLT FLCGTGHVVY TMFPIISDIA 120
  121 LKKNIRPERP MAVASVASQM AICASPVSVA VVSMVSILAA QHGVGHAYSM LEILMVSVPA 180
  181 SLCGVLVAAL WSLRRGKDLD KDEEFQARIK DPEQRAFIYD KSETLLDQTF PKEAYWATGI 240
  241 FFTAIAAVVL LGSFSELRPV FEAKGKLAPL SMNLVIQMMM LIAGAFILMS CKVKPTEIAN 300
  301 GPVFKAGMVA IFSVFGVAWM SDTYFISHMD ALKENLSHVV QNQPWTYALV LFLISKLVNS 360
  361 QAAALTAIAP MGLALGVDPK LLIAFLPASY GYFVLPTYPS DLACIGFDRT GTTKIGKFII 420
  421 NHSFIIPGLI GVGTASTVGY LLATTLL