YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|113887337, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	35	0.95
Transmembrane Helix	36	57	0.89
Non-Cytoplasmic	58	69	0.89
Transmembrane Helix	70	91	0.88
Cytoplasmic	92	101	0.82
Transmembrane Helix	102	123	0.91
Non-Cytoplasmic	124	134	0.76
Transmembrane Helix	135	154	0.73
Cytoplasmic	155	165	0.74
Transmembrane Helix	166	183	0.72
Non-Cytoplasmic	184	186	0.41
Transmembrane Helix	187	205	0.73
Cytoplasmic	206	210	0.43
Transmembrane Helix	211	231	0.89
Non-Cytoplasmic	232	295	0.72
Transmembrane Helix	296	316	0.90
Cytoplasmic	317	331	0.86
Transmembrane Helix	332	354	0.90
Non-Cytoplasmic	355	364	0.73
Transmembrane Helix	365	384	0.95
Cytoplasmic	385	403	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASDARQLSL FGRVLNALPN WQRDNEVPGV QLYDRALLTA VLSLIGFGFV MVMSASMPEA  60
   61 QTLTGNPFHF MTRHVGYLLG CLVIAAFVLR VEMQTWQRMS PIMLLGVFLM LLAVLVVGTT 120
  121 VNGATRWLSI GPIRIQVAEV AKFAFSVYMA GYLVRRHQEV RENAKGFYKP IAVFAIYAIL 180
  181 ILMQPDLGTV VVLFVGTVGL LFLAGARLLD FFALIFAGVL AFVALVLLEP YRMRRVTSFL 240
  241 DPWQDPFGSG YQLTQSLMAY GRGDWFGQGL GNSIQKLEYL PEAHTDFIFA VIGEELGFIG 300
  301 IIAVLSVLLF VALRAIRLGN LCLAMDKAFE GYLAYAIGIW ICFQTVVNVG ASIGMLPTKG 360
  361 LTLPFVSYGG SSLWVMTAAA MTLLRIDYER RMSLVQAVQG RLK