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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: LPTD_SHESR
Protein type: Globular with Signal Peptide
Type Confidence: 0.99
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQIRYFLALS LLPQLVLADE SPTASASQCV IEPPVPRIVS QPGLSAADQE KIRIVSDRSN  60
   61 AEMGKQAIFT GDVVFSQGDR HIAADEAILD QATEQFDANG NLVFQDNIFT VTADSLQAQM 120
  121 RSNRATLKGA QYWLHGQQVH GDAEKLQITM NNNLILTNTN FTTCPPDNVS WLLEAEKIKI 180
  181 NSEEEWGEIW NAKLRIADIP VFYIPYMTVP VSDKRKTGFL YPSFSTSTTN GFEVSAPYYW 240
  241 NIAPEYDLTF TPNYMSSRGL FTKTEFRYLA GEAQSGRLNL EYLGNDQMLS GSPNRYLYNW 300
  301 QHQGAIDKNW RVLANFTEVS DNNYFNDLKS DVNRATDNQL SRIGEVSYFE RNWDISTRVQ 360
  361 DIKVLGEDEK PYQVMPQVNF NYRAADFWNN LDFGFNSELT NFAHDDSDMN TATRLHMAPS 420
  421 LTLPIHGPSG SLTSQVKLMQ TNYWQEQNNS AFDGLDDTVS RTIPQVRING QINFERFTEL 480
  481 FDQNYRQTLE PQFQYLYVGY EDQRGIGIYD TAQLQDDYFG LFRDRRFSGL DRIADANQVT 540
  541 LGVTTRFFDD HNQEATKFSL GQILYLQDSK LGYEDNLFEQ NQSTSVLAAE LDTRLSHDWY 600
  601 LGAAIQYDTN SSNNKKTEVT LDFRPEANKL LQLSYRYVPD LLNSNTNDLV NISQAGVRGA 660
  661 WPINDSLYFV GNWYYDLNES RSIETYTGFQ YESCCYAIRL SYHYRIKTNY DDNIGSAVID 720
  721 EREQFESGVY LNLVIKGLGG SGPLGVSDML NDGLFNYRKP LYLRN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle