YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LPXK_SHESR
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQVLVNKIWY EGHPLRWLLL PFSVLFALIT AIRRSLFRLG LKSQTPLPVP VIVVGNITVG  60
   61 GSGKTPTVIY LIELLRQQGF NPGVISRGYG ADIQGVKVVT AADSAASVGD EPAMIVARTG 120
  121 VPMVVGAKRV DTAKALLAQF AVDVIICDDG LQHYALGRDI ELVVIDGKRG LGNRHLLPAG 180
  181 PLREGAWRLN QVDFVVVNGG PAQANQYEMQ LSPSAVLPVN PKAVAVFDPT QPVVAMAGIG 240
  241 HPARFFETLT QQGFQLALSH GFDDHQAYDK EVLCELAASR PLMMTEKDAV KCRDFAQENW 300
  301 WYLAVDAKLS PQFDQQLLSR VRSVAAAKQG KSHGV

Type	Start	End	Confidence
Cytoplasmic	1	13	0.42
Transmembrane Helix	14	37	0.80
Non-Cytoplasmic	38	335	0.74