YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|113888803, gi...
Protein type:	Transmembrane
Type Confidence:	0.73
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANQSRFTPG ILKKARWHIQ DNQVTPESVF KARRHIVKAM GLGAIGASIP GYVQAGLFDL  60
   61 FGEQPKTSFI TTPLTFEANS RFGKDEVLTP VDKVTTHNNF YEFGTSKQDP SDNAQQFKVD 120
  121 PWQLRIEGEV ERPMTLDYQD LTKLFPLEER IYRLRCVEAW SMVIPWVGFP LAALLKKVGV 180
  181 TSKGKYVAFE TAFDPEQMPG QKSRLMGGGI HYPYVEGLTI AEAMNELTLM SVGLYGKTLP 240
  241 PQNGAPIRLV VPWKYGFKSI KSIVRIRVMD KQPPTSWNQL APHEYGFYAN VNPAVDHPRW 300
  301 SQASERRIGE GGLFSAKRID TLPFNGYGEF VASLYEGMDL RQFY

Type	Start	End	Confidence
Cytoplasmic	1	38	0.69
Transmembrane Helix	39	58	0.66
Non-Cytoplasmic	59	344	0.97