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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|113890238, gi...
Protein type: Transmembrane
Type Confidence: 0.60
Topology Confidence: 0.54
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKSKLRTFR SKILSHIALP LILIMAAVYG INAWFNYLSA ESKLYDSLAQ ASNHSAYRLQ  60
   61 LLLEHAQINT QGMADFIGFI TNKEDIRNSE KIKRILTNRL ERNPDFYGSA VAFKPYTFAN 120
  121 KKLFSPYVFR DGDDFHYLDI GAEGYDYTDG SWDWWSKAIN QAGGYWSKVY FDEGAGNTLM 180
  181 VTYSVPFGPE NAYFGVATVD LALNQLPEQL GVSPSQLVVL DDQGRLIFHS DKEKVLAMTS 240
  241 AEWLDRNTRQ NKDFWALLDK GVNGQARFVD DKNVVYLASV ASVAKHKWRV IVMVPEQQLL 300
  301 STLLDDMASV VLNLSLLTLL LILTCYIAAK RLTRPLEMLE SGILAFGQGK TQQLAIPNGA 360
  361 VSEIVTLSST FNQMAELLAE REQAILDSRG NRFARLIDGM SDKSFYCSLD ASGQLAQVSE 420
  421 GVTKVLGMSP ELLKRKYQRL FTANPLNEKN WEYTDLALKG QNVPSHQVEL LDAGGHPRRL 480
  481 DLFMQPLVSD TGELMSVEML FTDVTEQFSA AAWSNAVLEA APEAMLIVDQ MGLIVFSNTR 540
  541 CQILFGYEAS AMLGLQVESL LPEALRSNHA RDRLQFLREG RDRPMANAKH VRALKADGGE 600
  601 FVAEIALSIL PADNEGRRQV AASIRDMTQK LAVEQKIRDS ELRFRGLVTN IPGAVYRTRI 660
  661 GDVWVMEYVS ENIADITGYA ASQFIENRQR TFESLILEED RALCHQHIDR ALAQQETFEV 720
  721 EYRIRHRDGS VRWVHEKGKA SYTDEGFPLW FDGSIDDITE SKLALVELES SRQQLTNITE 780
  781 SIPCTVYQLR WISPVDRTFT FLSGAAYHML GLHRDDLLKD FNIIAERIFD EERSEVVRAL 840
  841 AGKSEDKLQW VREFRYRHPN GSTRWMEAGA SGHICDDGAI IWNGYVMDIT ERKAMEEELA 900
  901 VSEAHFKALF DGSTIGIVNI DAKGVILDCN DQYCEDMGQS RESLCGMSIF EVLSLQDKET 960
  961 AKAQFKELAE GRVDHYRGER SFIRPNGEPL WMTVNVSALF DSQKRFESAV VSMVDMTELK1020
 1021 LLSDELLVAK EEADAASKAK GDFLANMSHE IRTPMNAIIG MSQLCLQTEL DKKQKNYVEK1080
 1081 IERASKSLLS IINDILDFSK IEAGKLDIES VPFQLDTMLE DLSDMFSEKA AHKQLELLFA1140
 1141 VAPNVPRHLF GDSLRLGQVL INLMNNAIKF TERGEVLLSL NLVEQQNDDV VLRFSVRDSG1200
 1201 IGLTAEQQAK LFKSFSQADT STTRKYGGTG LGLAICKQLV ELMGGTIGVE SQFGHGSTFY1260
 1261 FTVKLQISSG QKLTVAQELE GMSILVADDN ATARDIMRTT LESMGFRVDT VRSGEEAVTR1320
 1321 CSQQEYAVAL IDWKMPNLDG IETAKQIKQL AKNAPRILMV SAHATQEFLS QIEALGLAGY1380
 1381 ISKPISASRL LDGIMNSLGR AGVLPVRRNS ESIDPKLLLP LKGKRILLVE DNEMNLEVAT1440
 1441 EFLEQVGIIL SIATNGQIAL DKLAQQSFDL VLMDCQMPVM DGYQATQAIR KRPELAELPV1500
 1501 IAMTANAMAG DKEMCLKAGM NDHIAKPIEV NLLYQTLLKY LGGGVLPTED VSLNQLVEIP1560
 1561 VKPINLDSKS VVKWPEHPEL DIDRGLQLVQ NSTRLYQRIF DRFVTSQRNV VELINKALAN1620
 1621 DKRDDAVRMA HTLKGLAGNL SSSKLVELAR QLELHLSEKT EYQTELDQIQ VLVASICEAI1680
 1681 ERVKPQFEEP TQSATEHLSQ EALVSALNQL RQSLEDADSD AVTQIDALKP QVSSKLWQQL1740
 1741 SPALTMINQY QFDEAVDLID EVLAELA

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