YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|113890239, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	12	0.88
Transmembrane Helix	13	34	0.92
Cytoplasmic	35	58	0.84
Transmembrane Helix	59	81	0.84
Non-Cytoplasmic	82	90	0.62
Transmembrane Helix	91	109	0.87
Cytoplasmic	110	145	0.86
Transmembrane Helix	146	165	0.91
Non-Cytoplasmic	166	179	0.80
Transmembrane Helix	180	199	0.94
Cytoplasmic	200	208	0.87
Transmembrane Helix	209	233	0.81
Non-Cytoplasmic	234	242	0.72
Transmembrane Helix	243	262	0.85
Cytoplasmic	263	303	0.87
Transmembrane Helix	304	325	0.90
Non-Cytoplasmic	326	344	0.88
Transmembrane Helix	345	369	0.88
Cytoplasmic	370	384	0.89
Transmembrane Helix	385	405	0.90
Non-Cytoplasmic	406	413	0.65
Transmembrane Helix	414	432	0.89
Cytoplasmic	433	452	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFQALLSSL NGIVWGPVTL CLLVGTGIYL TLRLRLIQVF RLPMALGLLF KPAKGHGDLS  60
   61 SFAALCTALS ATIGTGNIVG VATAIKMGGP GALFWMWLAA FFGMATKYAE CMLAVKYRTT 120
  121 DARGQIAGGP MYYIERGLGI HWMAKLFALF GVGVAFFGIG TFAQVNAISD ALTIAFEVPT 180
  181 WATASVLTLL VAAVTLGGVK RISNVAQKLV PAMSIGYVLA CVWILASFAE SILPALQLVV 240
  241 ESAFTPVSAA GGFLGATVAQ AIQMGIARGV FSNESGLGSA PIAAAAAKTN EPVEQGLVSM 300
  301 TGTFFDTIII CTMTGLVLII TGVWSGDTAG AAMTSAAFSQ GGSAVVGQYL VTIALVCFAF 360
  361 TTILGWHYYG ERCWYYLVGE RGLRAYQILF LGLIAVGAFI KLDVIWLLAD TVNGLMAIPN 420
  421 LIAIIGLRHV IIAETQSYFV RALSNRTLDP IY