YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78689934, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.68
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPKFWWRFL PRSAFSQTVM LIGCLLLINQ LVSYVTVAVY VLKPSYQQIN QLIARQINLL  60
   61 FVDGVDIGRE HLTIVDALNA KVRDDGMKVY NQQQAREAGI EQATYYGFWS SQMSEYLGGE 120
  121 AEVRVTHGTV LQIWIRPPQA PSVWIKVPLI GQNVSDLSPL TLYLMVIGAL SVAGGWWFAR 180
  181 QQNRPLRRLQ KAAISVSRGE FPEPLPLKGS SELVEVTNAF NQMSHSMKQL EQDRALLMAG 240
  241 ISHDLRTPLT RIRLASEMMV EEDQYLKDGI VNDIEDMDAI ISQFIAYIRQ DQEASRELGQ 300
  301 INKLIQDIAQ AEANRDGEIE VVLSDCPEAL FQGLAIKRVL SNLVENAFRY GSGWVRISSQ 360
  361 FDGKRIGFSV EDNGPGIDES QIPKLFQPFT QGDIARGSVG SGLGLAIIKR IIDRHQGQVT 420
  421 LSNRTEGGLK AQVWLPLE

Type	Start	End	Confidence
Cytoplasmic	1	17	0.56
Transmembrane Helix	18	39	0.59
Non-Cytoplasmic	40	159	0.92
Transmembrane Helix	160	179	0.91
Cytoplasmic	180	438	0.86