YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114046396, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.91
Transmembrane Helix	6	24	0.95
Cytoplasmic	25	31	0.86
Transmembrane Helix	32	50	0.94
Non-Cytoplasmic	51	56	0.82
Transmembrane Helix	57	76	0.97
Cytoplasmic	77	86	0.90
Transmembrane Helix	87	107	0.94
Non-Cytoplasmic	108	156	0.96
Transmembrane Helix	157	179	0.90
Cytoplasmic	180	197	0.84
Transmembrane Helix	198	214	0.96
Non-Cytoplasmic	215	220	0.65
Transmembrane Helix	221	239	0.88
Cytoplasmic	240	247	0.63
Transmembrane Helix	248	267	0.80
Non-Cytoplasmic	268	271	0.68
Transmembrane Helix	272	292	0.89
Cytoplasmic	293	494	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQGLVTAAY IIAAVLFIFS LAGLSKQETA KHGNLFGITG MAIALLATIF NPDTSGVAWI  60
   61 IVAMVIGGAI GVRLALKVEM TEMPELVAVL HSFVGMAAVL VGFNSFIDLH PEQVSQVVVA 120
  121 VGGDINSTLA AVQDALSEAA KAAEKAHLTG AMLNIHLVEV FLGIFIGAVT FTGSIVAFGK 180
  181 LRGLISSKPL MLPHRHKLNL AAVLVSLALL VYFVQTGGTM PALLLMTLIA FAFGWHLVAS 240
  241 IGGADMPVVV SMLNSYSGWA AAAAGFMLSN DLLIVTGALV GSSGAILSYI MCKAMNRSFI 300
  301 SVIAGGFGTD GVASSGDEEM GEYRETNAED VADMLKNATS VIITPGYGMA VAQAQYPVAE 360
  361 ITQKLRDRGV KVRFGIHPVA GRLPGHMNVL LAEAKVPYDI VLEMDEINED FSDTDVVLVI 420
  421 GANDTVNPAA MEDPGSPIAG MPVLEVWKAQ NVIGFKRSMN TGYAGVQNPL FFKDNTQMLF 480
  481 GDAKASVEAI LKAL