YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|113969584, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFDYEILRVI WWALIGVLFI GFAVTDGFDM GVGALLPIIG KDDTERRIMV NTIAPHWDGN  60
   61 QVWLITAGGA LFAAWPMVYA VSFSGFYVAM MLVLFALYTR PVGFDYRSKI ENPKWRKSWD 120
  121 WALFCGGFIP PLIIGVAFGN LLQGVPFNFD EFLRATYHGG LFGLLNPFGL LAGLVSVSMF 180
  181 MMQGAAWLQM KTDGELRVRA ANATQLCALL VAVLFAAAGV WLANGIDGYV ITSTLDHHAL 240
  241 SNPTLKTVAV ESGAWLANYD KYPITMLFPV LGVALPLLVI LVSRLNRSGF AFLFSSLTVA 300
  301 MVILTCGAAM FPFVMPSSLD PNVSLTMWDA TASEMTLTVM TWAAIIFVPI VLSYTVWTYF 360
  361 KMFGRLNRKH IEDNKASLY

Type	Start	End	Confidence
Cytoplasmic	1	8	0.80
Transmembrane Helix	9	28	0.92
Non-Cytoplasmic	29	76	0.79
Transmembrane Helix	77	98	0.91
Cytoplasmic	99	118	0.91
Transmembrane Helix	119	142	0.90
Non-Cytoplasmic	143	161	0.90
Transmembrane Helix	162	187	0.80
Cytoplasmic	188	201	0.90
Transmembrane Helix	202	223	0.90
Non-Cytoplasmic	224	261	0.96
Transmembrane Helix	262	282	0.93
Cytoplasmic	283	289	0.84
Transmembrane Helix	290	314	0.89
Non-Cytoplasmic	315	337	0.91
Transmembrane Helix	338	360	0.92
Cytoplasmic	361	379	0.98