YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COBS_SHESR
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSERESWHKE IDLFLVAMGY FTRIPMPKWV EVDADKLNKA SRYFGLVGLL VGLLSAIVFW  60
   61 LTQNWLPAGV SVLLSMVTGV LLTGGFHEDG LADTFDGFGG GWTAEDKLRI MKDSRLGSYG 120
  121 ALALMLVLML KWQLLVELAL YDPVVAGSAM IVAHTVSRVV AASLIFTEKY VRDDESSKSK 180
  181 PLAQHQGINE LFILIASGVL VLLVLKGIAA LSLLLVMIGL RRLIVVIFRR QIGGYTGDTL 240
  241 GAAQQICEIV CYFVLLVVGS IL

Type	Start	End	Confidence
Cytoplasmic	1	42	0.88
Transmembrane Helix	43	61	0.95
Non-Cytoplasmic	62	67	0.68
Transmembrane Helix	68	86	0.90
Cytoplasmic	87	115	0.89
Transmembrane Helix	116	135	0.91
Non-Cytoplasmic	136	190	0.54
Transmembrane Helix	191	220	0.80
Cytoplasmic	221	240	0.49
Transmembrane Helix	241	261	0.52
Non-Cytoplasmic	262	262	0.39