YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78688555, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTSMEFTLG LSQGVAWPWP IAVYLFFAGI SGGALTIALA LRFYLGQVEN TAFLKAATLL  60
   61 SFVTISLGML CLVLDLTNPL FFWRILVFYN LNSVMSIGVI ALSVYIPLVA VVALFALEKE 120
  121 LMAIPQLQFL GPIITKLKGF RRPMEAVVLL LALSVCAYTG FLISALIRFP LINTSVLPAL 180
  181 FIASGLSAGG ASAKMLAVWL FKEPLHSGEM KILHSAEWPI MFAEALFIFM IATALLTGNA 240
  241 GGQFAFAAFQ EGIWASVFWI GVVGIGFGAP LLLNFATGKH FSHSAKAFYM SGMCAVVGMM 300
  301 CLRLFILLAG QNYAI

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.93
Transmembrane Helix	21	44	0.92
Cytoplasmic	45	52	0.86
Transmembrane Helix	53	76	0.86
Non-Cytoplasmic	77	93	0.84
Transmembrane Helix	94	117	0.90
Cytoplasmic	118	145	0.96
Transmembrane Helix	146	167	0.94
Non-Cytoplasmic	168	176	0.75
Transmembrane Helix	177	198	0.93
Cytoplasmic	199	217	0.88
Transmembrane Helix	218	238	0.89
Non-Cytoplasmic	239	254	0.75
Transmembrane Helix	255	276	0.93
Cytoplasmic	277	286	0.89
Transmembrane Helix	287	309	0.92
Non-Cytoplasmic	310	315	0.92