YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|117920975, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQADMSIVGL FLQASLLVKF VMFTLLCLSV MSWTVILQRR SLLTSAKSKS AKFEDKFWSG  60
   61 VDLNRLYKEL SARPDNTGLE SLFVTGFKEY SRLNKLNSKV PDAVMDGTSR AMRVTLSREL 120
  121 EKLEANLPLL ATIGSTSPYI GLFGTVWGIM NSFIAIGSME NATLAMVAPG IAEALIATAM 180
  181 GLFAAIPAVI AYNRFATQVE KLEIGYANFM EEFSSILHRQ AYSEKEGV

Type	Start	End	Confidence
Non-Cytoplasmic	1	15	0.88
Transmembrane Helix	16	37	0.92
Cytoplasmic	38	126	0.97
Transmembrane Helix	127	150	0.76
Non-Cytoplasmic	151	169	0.69
Transmembrane Helix	170	192	0.86
Cytoplasmic	193	228	0.95