YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78688115, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTNIRAFAQ QKSRLSVLRL VLAFILGAST ALSFAPYSLW IIYPVAMALA LWLSGSLTPK  60
   61 ASFFHWLSFG FGCFAVGISW VHVSMDTFGG LPLAASVGLM ALLALYLALY PALTGLGLAW 120
  121 LTRTNTPSLW RNLLLFPSLW VLAEWARGWV MTGFPWIWAG YSQTQGPLKE LASIIGALGL 180
  181 SFLIAMLAGA LALCFSKRYK SLLILLPIIA AAAWVAPKLT QIQPTGESVK VALVQGNIPQ 240
  241 SMKWEPEALW PTLLKYMDLS REHFDADIIV WPEAAIPAPE SMVQDFLDNA NKVANLNHTS 300
  301 IITGIISRQQ NEFYNSLIVL GNHNQKQQDT PDYESDGSNQ FKKHHLLPIG EFVPFETLLR 360
  361 PIAPFFNLPM SSFARGDYQQ PNLSAVGHKI APAICYEIAF PEQLRDSVNL GTDLLLTVSN 420
  421 DAWFGTSNGP LQHMEIAQMR AIELGRPLVR ATNNGVTAVV DEKGNITAAL PQFETGVLSA 480
  481 TIPLVTGQTW FAKIGQTPLL LLCGALLFVG FIRRKK

Type	Start	End	Confidence
Cytoplasmic	1	14	0.97
Transmembrane Helix	15	34	0.92
Non-Cytoplasmic	35	38	0.78
Transmembrane Helix	39	56	0.92
Cytoplasmic	57	62	0.80
Transmembrane Helix	63	83	0.93
Non-Cytoplasmic	84	96	0.71
Transmembrane Helix	97	121	0.80
Cytoplasmic	122	128	0.90
Transmembrane Helix	129	151	0.81
Non-Cytoplasmic	152	170	0.86
Transmembrane Helix	171	194	0.91
Cytoplasmic	195	201	0.77
Transmembrane Helix	202	217	0.94
Non-Cytoplasmic	218	489	0.97
Transmembrane Helix	490	512	0.84
Cytoplasmic	513	516	0.86