YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NHAA_SHESA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	13	0.93
Transmembrane Helix	14	37	0.86
Non-Cytoplasmic	38	58	0.92
Transmembrane Helix	59	77	0.95
Cytoplasmic	78	93	0.80
Transmembrane Helix	94	115	0.89
Non-Cytoplasmic	116	123	0.87
Transmembrane Helix	124	145	0.90
Cytoplasmic	146	153	0.76
Transmembrane Helix	154	174	0.90
Non-Cytoplasmic	175	178	0.73
Transmembrane Helix	179	197	0.78
Cytoplasmic	198	203	0.52
Transmembrane Helix	204	220	0.73
Non-Cytoplasmic	221	223	0.54
Transmembrane Helix	224	241	0.83
Cytoplasmic	242	257	0.73
Transmembrane Helix	258	277	0.91
Non-Cytoplasmic	278	289	0.63
Transmembrane Helix	290	312	0.87
Cytoplasmic	313	327	0.78
Transmembrane Helix	328	350	0.90
Non-Cytoplasmic	351	359	0.79
Transmembrane Helix	360	381	0.92
Cytoplasmic	382	389	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKAIRNFLS QESAGGILLL VAVVLAMLMA NSPLAGLYQG FLGTEVQVRV GALDLHKPLL  60
   61 LWINDGLMAL FFLLIGLEVK RELLEGALSS VAQASLPTFA AIGGMLVPAG IYLLFNYGDP 120
  121 VTQVGWAIPA ATDIAFALGI MALLGSRVPV ALKVFLLALA IIDDLGVIVI IALFYSSDLS 180
  181 TISLIIASIA IVGLVALNRK GVTALAPYGV LGLVLWVAVL KSGVHATLAG VIIAFCIPLR 240
  241 AKDGSSPSEH LEHSLHPWST FLILPVFAFA NAGVALGNMS LDALISPVPV GIALGLMLGK 300
  301 PIGVMLFSYV AVKLKLAQLP DGIGWKQIAP VAAMCGIGFT MSMFIASLAF EQADPMFGDL 360
  361 ARLGTLIGSI LAALIGYFWL SKVLPKKGV