YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78687910, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	22	0.98
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	185	0.97
Transmembrane Helix	186	205	0.93
Cytoplasmic	206	212	0.69
Transmembrane Helix	213	233	0.86
Non-Cytoplasmic	234	241	0.77
Transmembrane Helix	242	263	0.89
Cytoplasmic	264	277	0.87
Transmembrane Helix	278	297	0.93
Non-Cytoplasmic	298	303	0.70
Transmembrane Helix	304	326	0.89
Cytoplasmic	327	334	0.87
Transmembrane Helix	335	357	0.92
Non-Cytoplasmic	358	364	0.91
Transmembrane Helix	365	386	0.90
Cytoplasmic	387	625	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKFGSLLVL LLGMLISFGG FANTMSIDEH TSTPLNLTPW LMVTHSNANP QLDDIQALPK  60
   61 SQWHKFTSDD IQRLSQHDFW LRVNLTSGDE SLARILALDN PLLDRVTIFH LVNNQLINTT 120
  121 EMGDTLLYKN RPLPSNIFLY PFKLSSNEQH TFYLHIVTEG SAAIPLSLWS ANDLAQIAES 180
  181 TAVEHGFQLG VLAAIGIFSL FIALASGSFS YSYYSGYVLC MTLLVATING YAFRFLWPNW 240
  241 PALQQLMVPV LLPLVMAFAL MFTEKILQLK YYNRRMLLMC RYSAVYIILV GLLVPFLRYG 300
  301 TVLYIEIISV AILSIIMMIL AIIQAINGQK LAKLYTIGWV SMLTGACISS LLYLSVIEFN 360
  361 IKPQTPVMLG LTFEIIFMSL VLAIRYNDER KSKLRIQQEA LKQAQKIRSA REEALKVEAE 420
  421 TNERLEQMVQ ERTLELEITL RELHEVNQKL TEQSTIDSLT GVKNRSAFDK RLLAESRISR 480
  481 RQETPIALLM LDIDRFKSIN DQFGHLAGDQ ALKVIATTLQ QHLKRPTDLV SRFGGEEFAI 540
  541 ILPNTTAEGA IQVAESIRDA VTSIGLAWEG KPIPLTVSIG VSADVISNDQ HSTELLEQAD 600
  601 KALYQAKNSG RNQVKLYAPA QTEPT