YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|117919912, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.56
Topology Confidence: 0.11
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSDNTKNY TMPKALLQII LLSCLFLSTL ISSFSASAFS SETSPIVILQ SQSFGVAQGL  60
   61 SQGTVTSIVQ DNDGYLWIGT LNGLNRFDGR NFKHFYADGT DSGLPSSFIR SLQLDKNGDL 120
  121 YVGTDNGLAI YDKSKDSFIK YGHPLENKPI WSINISINSL IIGTDNSIIE ITGKNNFNTL 180
  181 AQEGIGEIKK SIKIGYTYLF KDYSGKLYEL KNGNLTLIKE NVIDIEQKDA NTLILSSKNG 240
  241 LFEYDGNLVK KIDDRAFSQL AKNNELIYGI SENSIINILT RKIIGSLSEY AQDKATYFYV 300
  301 NKSYFSVGSV DQGFSIIKSQ SNLVKHTTLA NDSTWHITKN KSGFLVSSDS EYISLFNNNF 360
  361 QKAVDFNTHT KGYKYAVMNE GKLFYGTSSG LFVLENESAT MLSQETISSL SSNDDGSILS 420
  421 AGTPDGKILI IKDSNVINTF DTQRGEPIFD IEIISENLFY VASQGGLRKY ENGNETVVSE 480
  481 QLTYSIEKDN NNILFGTSSA LMRYNTLTGT IEKVLSNNKE IYSIVSDIDF ITVSSLGEVI 540
  541 VYNKKNHSSY TLNTSNGSQY EYNSPSAIRV NEFVLLAGIN GISIVSPEEV NEYIKNQKVS 600
  601 KTEITNFSVF NISQEKNGKY LSQPIDVTNE IKLKYSEYPF SFDFISPMSD EFATSYYYRM 660
  661 QGLSDTWIYS NGTNSATYTN LSPGKYVFQV YAMNKLSGDK SPEKEVNIII TPPWWSSTQA 720
  721 KVIYFIILML FTLFVFKAIL RKREIQRQIA LSEERLKLSL WGSGDEMWDW DIETGNIFRS 780
  781 NIWGALEFPR DGHRSGNSDE ESNIHPMEQE RVREALNKHF YGETDHFEAA YRVKGKDDSW 840
  841 IWILDRAKIV ERDDKDNALR MTGTIKNISQ FKQKEEQLKL FEKAIENISE GMFILDSEYR 900
  901 FVEVNEACCR ISQRNRTDFI GNLLTFDLYP ESFSNQIRTM LKQQGRWASE VEASRGDNSH 960
  961 FHMELTIDAI YDELGELSHY VGVFSDISRR KQQEEELRKL TNNDLLTGLP NRSNLQVTLG1020
 1021 NLVNKEITHA LMVLDLDNFK RINDSLGHQI GDQLLKLVSI RIKSILPKNT SIYRLGGDEF1080
 1081 AIVLDKTSDI SASAAIAGRV IEAFKTMFEI GNEQLVLGVS IGIVFYPEDE QSEQALLRKA1140
 1141 DIAMYHAKSA GGNCYQFYSE SLNQHAIKQL EIENLIREGL KEDLFEVYYQ PKVDLKSGHV1200
 1201 AGMEALVRLN HPTRGLIPPN DFIPLAEENG LIIEIGEIVL RKACFAAQKW REQGLFKGRV1260
 1261 AVNLSSRQFA LPDLQQRIES ILRLTQLPAS HLELEITEGT VIKQPEMAIT VMQQLAKMGV1320
 1321 SLALDDFGTG YSSLSYLKRF PIHTLKIDKA FVDDIDKSDR DLKMVDSIIT IAHNMGLSVV1380
 1381 GEGVEQAAQL NILRALNCEE IQGYIFSKAI NEIEFTQLLQ DDRSKFMPHH KII

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle