YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ETCE_SHESA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNYREIAWQ GLWKNNPGLV QLLGLCPLLA VTATLTNALG LGVATMLVLI GSNILVSLVR  60
   61 DYVPKEIRIP VFVMIIAALV TAVQLLINAY AYGLYLSLGI FLPLIVTNCI IIGRAEAFAS 120
  121 RNNAFSAAFD GLMMGLGFTL VLAVLGATRE ILGQGTLFDG ADQLLGPWAK ALTIQVWQVD 180
  181 TPFLLAMLPP GAFIVMGLLI ALKNVIDKKL KERQPEVAVQ PSVTRARITK VS

Type	Start	End	Confidence
Cytoplasmic	1	11	0.84
Transmembrane Helix	12	33	0.78
Non-Cytoplasmic	34	37	0.62
Transmembrane Helix	38	59	0.86
Cytoplasmic	60	68	0.81
Transmembrane Helix	69	87	0.95
Non-Cytoplasmic	88	93	0.67
Transmembrane Helix	94	113	0.92
Cytoplasmic	114	126	0.77
Transmembrane Helix	127	148	0.90
Non-Cytoplasmic	149	182	0.94
Transmembrane Helix	183	205	0.89
Cytoplasmic	206	232	0.99