YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NHAB_SHESA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.78
Transmembrane Helix	20	39	0.86
Non-Cytoplasmic	40	41	0.58
Transmembrane Helix	42	63	0.70
Cytoplasmic	64	67	0.59
Transmembrane Helix	68	88	0.74
Non-Cytoplasmic	89	95	0.73
Transmembrane Helix	96	115	0.93
Cytoplasmic	116	128	0.67
Transmembrane Helix	129	145	0.86
Non-Cytoplasmic	146	147	0.52
Transmembrane Helix	148	167	0.80
Cytoplasmic	168	208	0.67
Transmembrane Helix	209	228	0.85
Non-Cytoplasmic	229	244	0.66
Transmembrane Helix	245	267	0.88
Cytoplasmic	268	306	0.73
Transmembrane Helix	307	340	0.76
Non-Cytoplasmic	341	356	0.61
Transmembrane Helix	357	380	0.85
Cytoplasmic	381	395	0.54
Transmembrane Helix	396	415	0.71
Non-Cytoplasmic	416	457	0.73
Transmembrane Helix	458	476	0.83
Cytoplasmic	477	483	0.69
Transmembrane Helix	484	505	0.89
Non-Cytoplasmic	506	533	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPMTMSQAFI GNFLGNSPKW YKIAILSFLI INPILFFYVS PFVAGWVLVL EFIFTLAMAL  60
   61 KCYPLQPGGL LAIEAVAIGM TSASQVLHEI EANLEVLLLL VFMVAGIYFM KQLLLFVFTK 120
  121 MITKVRSKIL VSLLFCLASA FLSAFLDALT VIAVIITVAV GFYSIYHKVA SGKDFSADHD 180
  181 HTSEGKNDDG ENQLNEDELE SFRGFLRNLL MHAGVGTALG GVCTMVGEPQ NLIIAAQANW 240
  241 QFGEFAIRMS PVTVPVLFAG ILTCFIVEKF RWFGYGAQLP DAVHKILCDY AAYEDARRTN 300
  301 KDKMKLVIQA FVGVWLIAGL ALHLASVGLI GLSVIILTTA FNGITDEHAL GKAFEEALPF 360
  361 TALLAVFFAV VAVIIDQQLF GPVIQWALNH EGNTQLVIFY IANGLLSMVS DNVFVGTVYI 420
  421 NEVKAALING QITRDQFDLL AVAINTGTNL PSVATPNGQA AFLFLLTSAL APLIRLSYGR 480
  481 MVWMALPYTI VLSIVGVMAI QSGFLEQMTQ YFYDSHAILH HSVKEALAPA AAH