YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78504852, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEHQTAFSPI TNAKLKRPQL ARLSLIALAL SATSAIVSQT ASAHGYVVSP ESRSYACKTG  60
   61 SNLNCGAVQW EPQSVEGPSG FPESGPADGK IASAANGAFS PLDEQSPSRW SKRDIKSGWN 120
  121 DFSWQFTANH VTRNWRYYLT RQGWDQNQAL SRASFDLAPF CVIDGGMVQP PKLVTHNCYV 180
  181 PEDRTGYHVI LAVWEVGDTT NSFYNAIDVN FSSGTVVPGE WTDIGDINPS LDLKAGDKVM 240
  241 TRVFDANGEQ TAKQTQITIA DATQGAKQNW PFLLASAINA QQPQLKAGQK NASGVISPVY 300
  301 GKNEIYAAPN SGLERVEVSF DIAPAPGNQL DVTSLADDYT IVDGAAKVGF DVSTNTDMQV 360
  361 SAYLFSHDGT AAGYVTQAVN NTARV

Type	Start	End	Confidence
Signal Peptide	1	43	0.98
N-region	1	34
H-region	35	40
C-region	41	43
Cleavage Site	43	44
Non-Cytoplasmic	44	385	0.99