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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: LPTD_SHESA
Protein type: Globular with Signal Peptide
Type Confidence: 0.99
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQIRYFLALS LLPQVVLADE SPTASASQCV IEPPVPRIVS QPGLSAADQE KIRIVSDRSN  60
   61 AEMGKQAIFT GDVVFSQGDR HIAADEAILD QATEQFDANG NLVFQDSIFT VTADSLQAQM 120
  121 RSNRATLKGA QYWLHGQQVH GDAEKLQITM NNNLILTNTN FTTCPPDNVS WLLEAEKIKI 180
  181 NSEEEWGEIW NAKLRVADIP VFYIPYMTVP VSDKRKTGFL YPSFSTSTTN GFEVSAPYYW 240
  241 NIAPEYDLTF TPNYMSSRGL FTKTEFRYLA GEAQSGRLNL EYLGNDQMIS GSPNRYLYNW 300
  301 QHQGAIDKNW RVLANFTEVS DNNYFNDLKS DVNRATDNQL SRIGEVSYFE RDWDISTRVQ 360
  361 DIKVLGEDEK PYQVMPQVNF NYRAADFWNN LDFGFNSELT NFAHQDSDMN TATRLHMAPS 420
  421 LTLPIHGPSG SLTSQVKLMQ TNYWQEKNNS GFDGLDDTVS RTIPQVRING QINFERFTEL 480
  481 FDQNYRQTLE PQFQYLYVGY EDQRGIGIYD TAQLQDDYFG LFRDRRFSGL DRIADANQVT 540
  541 LGVTTRFFDD HNQEATKFSL GQILYLQDSK LGYEDNLFEQ NQSTSVLAAE LDTRLSHDWY 600
  601 LGAAIQYDTN SSDNKKTEVT LDFRPEANKL LQLSYRYVPD LLNSNTNDLV NISQAGVRGA 660
  661 WPINDSLYFV GNWYYDLNES RSIETYTGFQ YESCCYAIRL SYHYRIKTNY DDNIGSAVID 720
  721 EREQFESGVY LNLVIKGLGG SGPLGVSDML NDGLFNYRKP LYLRN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle