YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LPXK_SHESA
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQALVNKIWY EGHPLRWLLL PFSVLFALIT AIRRSLFRLG LKSQTALPVP VIVVGNITVG  60
   61 GSGKTPTVIY LIELLRQHGF NPGVISRGYG ADIQGVKVVT AVDSAAAVGD EPAMIVARTS 120
  121 VPMVVGAKRV DTAKALLAEF AVDVIICDDG LQHYALGRDI ELVVIDGKRG LGNRHLLPAG 180
  181 PLREGAWRLN QVDFVVVNGG PAQANQFEMQ LSPSAVLPVN PKAEAVFNPT QPVVAMAGIG 240
  241 HPARFFETLT QQGIQLALSH GFDDHQAYDK HVLCELAASR PLMMTEKDAV KCRDFAQENW 300
  301 WYLAVDAKLS PQFDQQLLSR VRSVAAAKQG KSHGV

Type	Start	End	Confidence
Cytoplasmic	1	13	0.41
Transmembrane Helix	14	37	0.79
Non-Cytoplasmic	38	335	0.73