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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|117920856, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.73
Topology Confidence: 0.66
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRFPFGLRT KVIGLSLFLL CLPWLGYQYV WEMEKYLRHG QERTLEGTTQ ALATALHERP  60
   61 KLFDGQASFL KQVEKSRDLY AYPLAGAILL DGKLNEWQEY QHRFIQYGEA NLIMRADPST 120
  121 PLTLSFTHMV GQYDGYLYAF FQVVDPNVVF RGKNALSVDR NDHLSIATLA PDNKFKRYIV 180
  181 ATTQPGWISA FELPANPKQT VPVTPEVRIQ GQWATTDVGY NIELRIPLDM VGSKLGFAIS 240
  241 DVNDSKYRDI TAVVGTSALD TVDKLGTVLV PSPEIENIIK GMSHYSSRIW VVDKHGRVLA 300
  301 KSGDIRDSNS VWTRTLDDEN SNSMWQRFQR DYLHPLYYKI LTKPPKDFID SLQDSTELDG 360
  361 SHIQKALAGQ QSSTWRLTPD NKAVVLAAAS PIWIDNNVMG AVVAEETTHG IRTLRNRALE 420
  421 KLFNVILTIM SMGTLALFFF ASSISNRIRK LRDEAENAID SQGRVRNHLK PSKARDEIGD 480
  481 LSRSFASIVG RLGQYTHYLE NMSSRLSHEL RTPVAVVRSS LEHLNLQTLD KDTQKYVDRA 540
  541 QEGVSRLSMI LNNMSEATRL EQSLTQADVA KFPLSQVVSG CMQGYQMTYP EQQFSVKVPE 600
  601 QPLMMQGVPE YIAQLMDKLI ANAIEFCHQG SAIEVTLTQV GKQATLLISN LGPQLPVDMS 660
  661 EQIFDSMVSV RINQAQDKPH LGLGLYIARL VTEFHQGKIL ARNRSENDGV DILVTLPLS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle