YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78505622, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKMKSKLKWL KGRFWTISFP YAWLLLFFAL PFAIVLKISF STAAISIPPY EATFQYADDV  60
   61 LNIFLHLGNY LMLLDDSLYY TAYLSSLKMA LISTIGCLII GYPMAYAIAR APARLQTVLL 120
  121 LLVMLPSWTS FLIRVYAWMG ILSNTGIINN TLMWLGIISD PLQILNTNIA VYIGIIYAYL 180
  181 PFMILPLYAT LVKLDMSLIE AASDLGSSRL NTFWKITFPL SKSGVIAGSM LVFIPAVGEF 240
  241 VIPELLGGPD SLMIGKVLWQ EFFNNRDWPV ASSLAIVMLA LLIIPITLFH RYQARSLEKD 300
  301 L

Type	Start	End	Confidence
Cytoplasmic	1	20	0.85
Transmembrane Helix	21	40	0.91
Non-Cytoplasmic	41	86	0.85
Transmembrane Helix	87	106	0.90
Cytoplasmic	107	116	0.72
Transmembrane Helix	117	138	0.83
Non-Cytoplasmic	139	168	0.76
Transmembrane Helix	169	192	0.84
Cytoplasmic	193	217	0.91
Transmembrane Helix	218	242	0.79
Non-Cytoplasmic	243	267	0.93
Transmembrane Helix	268	289	0.93
Cytoplasmic	290	301	0.90