YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NHAP2_SHESA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.57
Transmembrane Helix	6	26	0.80
Cytoplasmic	27	29	0.54
Transmembrane Helix	30	46	0.73
Non-Cytoplasmic	47	57	0.69
Transmembrane Helix	58	78	0.89
Cytoplasmic	79	88	0.82
Transmembrane Helix	89	112	0.89
Non-Cytoplasmic	113	119	0.74
Transmembrane Helix	120	141	0.91
Cytoplasmic	142	161	0.86
Transmembrane Helix	162	181	0.83
Non-Cytoplasmic	182	190	0.68
Transmembrane Helix	191	211	0.92
Cytoplasmic	212	219	0.74
Transmembrane Helix	220	238	0.87
Non-Cytoplasmic	239	242	0.73
Transmembrane Helix	243	259	0.90
Cytoplasmic	260	270	0.74
Transmembrane Helix	271	292	0.89
Non-Cytoplasmic	293	298	0.81
Transmembrane Helix	299	324	0.82
Cytoplasmic	325	334	0.95
Transmembrane Helix	335	357	0.88
Non-Cytoplasmic	358	364	0.72
Transmembrane Helix	365	388	0.85
Cytoplasmic	389	574	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDADSINSFF LIGALLAAVS VLLSPVSSRL GIPILLIFLA VGILAGEDGP GGILFDDYST  60
   61 AYLVSNLALA IILLDGGMRT RVASFRVALW PALSLATFGV AITTSITGVM AAWLFDLHWL 120
  121 QGLLVGAIVG STDAAAVFSL LKGRSLNERV GATLEIESGS NDPMAVFLTV TLIAILANVD 180
  181 AELSVSFMLI SFIKQFGLGI FLGLGGGWLL WKLVNLSKLA EGLYSILVLS GGLMIYAASN 240
  241 KLGGSGILSI YLVGLFLGNK PTRGRHSILN VLDGMTWVSQ IGMFLVLGLL LTPSDLLDIW 300
  301 LPGLALAFGM ILFARPLAVW LSLLPFKSFS SRDRWFISWV GLRGAVPIIL AVFPMMAGLP 360
  361 GAQLYFNLAF FVVLVSLLVQ GASLTTAARL AKVELPPKPL PISRSGVEIY PSSEWEVFVY 420
  421 HLSENKWCIG EPLKRLSMPD GTRIAAVFRH NTLLHPSGST CLEAGDILCV LGQEKSLEAL 480
  481 SNLFSQAPET KEVPRFFGDF FIDTEVKLLD LAPIYGLELD EATGDMTVAD LVAAELGSHP 540
  541 VLGDQFLWQS LHWVVAGLNE GKVTNVGIRL PAEA