YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|117919281, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHESQTTSSA TQAVQTSRLS WFDDVLLLGI MAVLAGCGLI YEYLLSHYAG RILGALEAAI  60
   61 YTMIGLMIVS MGLGAFAARK IKDAFTGFVV LELTVALCGS LAILITAAVI GFGQQLPMLI 120
  121 ASTLGLPPDQ LPEGGMIGSL QKLSEHLPYV WGVLLGLMIG MEIPLIARVR QSLSDEHLLH 180
  181 NAGTIYGADY IGAGIGAAIW VGFMLAIDIQ LAAALTASFN LLAGFVFIWR FWPKIQRAKL 240
  241 LLAGHFVVTG VLLLLAIQGP SWEQQFNNLL YKDKVVYAKA TRFQQLTFTE RLRGNGLSPI 300
  301 YSLYINGRLQ FSSIDEHIYH AFLVHPTLAA SARHNKVLII GGGDGLGLKQ VLRWEPEQVT 360
  361 LLDLDAALVQ LFKTPDTDMP KRLSQALLAL NGNAFNDPRV KVINDDAFNG VDKLIAAGDK 420
  421 YDAIIVDLPD PSHPDLNKLY SDYFYRKLKE LMSNDGALTV QSTSPYHAQK AFISVAKTLA 480
  481 LAGFDVKQYH HNVPSFGEWG WSIATLSGKD AQHRLGELTT LPIADDWLTL GLVKGAFEFP 540
  541 ANFYQDAASI KPNELGSLQL YHYHQQAWSE TQGLDLF

Type	Start	End	Confidence
Cytoplasmic	1	20	0.98
Transmembrane Helix	21	45	0.86
Non-Cytoplasmic	46	57	0.77
Transmembrane Helix	58	77	0.95
Cytoplasmic	78	87	0.83
Transmembrane Helix	88	110	0.92
Non-Cytoplasmic	111	146	0.93
Transmembrane Helix	147	167	0.93
Cytoplasmic	168	181	0.85
Transmembrane Helix	182	204	0.87
Non-Cytoplasmic	205	210	0.73
Transmembrane Helix	211	232	0.92
Cytoplasmic	233	240	0.86
Transmembrane Helix	241	260	0.94
Non-Cytoplasmic	261	577	0.99