YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78506146, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMTDFISLLS HSLAQSPWLF ITLSFVFAAT IGSFLNVVIH RFPVMMKREW QQECNQYLQE  60
   61 YHADVVEQIG IEKLNKPIDT YPEKYNLVVP GSACPKCKTA IKPWHNLPIV GWLMLRGKCA 120
  121 ACNTAISSRY PIIELVTGLL VATLAWHFGP SWQFVFAAVL TFVLIALTGI DLDEMLLPDQ 180
  181 MTLPLLWLGL LINLNHTFTT PTDAVIGAAA GYLSLWSVFW LFKLLTGKEG MGYGDFKLLA 240
  241 VFGAWLGWQM LPLVILLSSL VGALVGITLI VLKRNQLANP IPFGPYIAAA GWIALIWGQP 300
  301 IVDWYLSTL

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.94
Transmembrane Helix	18	39	0.95
Cytoplasmic	40	129	0.94
Transmembrane Helix	130	148	0.66
Non-Cytoplasmic	149	151	0.57
Transmembrane Helix	152	172	0.85
Cytoplasmic	173	182	0.54
Transmembrane Helix	183	216	0.71
Non-Cytoplasmic	217	247	0.54
Transmembrane Helix	248	272	0.86
Cytoplasmic	273	280	0.71
Transmembrane Helix	281	301	0.88
Non-Cytoplasmic	302	309	0.73