YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|117918788, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTSTAASST QSHSLSVDVA IIGAGPSGSI AASLLHKQGK RVLVLEKQHF PRFSIGESLL  60
   61 PCCMQFIEEA GMLEALNAAG FQYKNGAAFR RDGVYTTFDF TDKFTPGPGT TFQVQRANFD 120
  121 KLLADTAASF GVEIRYGETV EAIDLTAAPR LTVRNEQGEL YQVEAKYVLD ASGFGRVLPR 180
  181 LLDLETPSSL PTRSAIFTHV EDNISDPDFD RNKILISVHP QHQDIWYWLI PFSNGRCSLG 240
  241 VVAEPQLLAR LEGDLEQQLL TIVKEEPGLK ALLANAKVAQ PCATLKGYSA NVSRLATDKF 300
  301 ALLGNAGEFL DPVFSSGVTI AMQSASMAAK CVLKQLNGNT VDWPAEYSAP LMQGVNTFRT 360
  361 YVQAWYDGRF QDVIFYENPN PKIKQMICSI LAGYAWDVQN PFVKDSERRL NMVVELCRQE 420
  421 AELTAEPAVS ELAEV

Type	Start	End	Confidence
Signal Peptide	1	31	0.63
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	435	0.98