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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|117611834, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.89
Topology Confidence: 0.57
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPLSLSRSS LTGRLMLAFG VLGVLLLLLV SLGSLSLHWL KQADSYLYEE SLPASQAARQ  60
   61 LVQASNALSD GVTQLGQVED ERQREFIGRK LSLESATMLN SIKVLLTLDV NEDNHLSVLA 120
  121 GQIIEQLTLL GKSVGQRITL GDELQLRARE LSVAAGRASE LLQSELAVVD SAILAKLSQA 180
  181 YPDMAGDKRS GQLLDDVIER ELDVQEQLNR VLKLVHQIAL LSQLFEASEL QSELQLSVPR 240
  241 LLATFASTAP SHPMAQNHPD HPKQGTAIEL ATTEAPTAEV GIDLMALTTV AELIRDPGRL 300
  301 NALKAELAIL LHTPKIIKLQ RELSQSLQRQ QRQQQELAEK LYSLNTLVDS ALNQQQQRAE 360
  361 LARSDYLMQL SYARLGLWGT GILMLVIMAV VVYRVIYRGI ALRLNQATEA MSRLSLGDTN 420
  421 MSLDAHGDDE LTAMANAIEA FKRKTAHNLK LQTDLRQVAD ELTEHKKALE QTVATRTQEL 480
  481 AEANLRLDAE AKGHAKARIV AEEASQAKSQ FLATMSHEIR TPLNGLLGTL TLLGHSQLPP 540
  541 AQQQMLALSQ YSGTLLQTVL SDILDFSRLE QGNLTNEPRP TDINALLDEV LAIMVAGANL 600
  601 AGLSLRLNCP QLPACIHIDG PKLRQVLFNL IGNGIKFTPE GGVSLNVSVR GDKLAFVVAD 660
  661 TGVGIAPEVR EQLFMPYCVL PNQGRSRGTG LGLAICKQLV ELMDAEGPGI WVKSEPGKGS 720
  721 EFGFELSFTQ CDKALDTQTQ VQKRVNPQRV LVIEDNKVNA MVAQGFLAHL GHSSSLAVSC 780
  781 QQALAHVSGD KAFDAVMLDI QLSDGSGLTL LPQLKALFAN DNVKFAAFTA QMQTEELSLY 840
  841 REAGFDTVLA KPLSLQTLTE WLGVARVSAS IPASLSESSA HSPQSLQSSN NAEPTSHNHQ 900
  901 AETLLDLNQL QQDLEVLGVK AVSDMLALYR TSSAEQMERL SALSSVAHFS EGAKLLHSLK 960
  961 GSSASMGLKA LTQCCQQWEK ALNTTGENAL DSKAVTELTA CWQASITAIE QWLATKG

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle