YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|117612505, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATLLQKKFG LTSKILFGMA TGIALGLILR NVFPESDIVK DYITEGFLHV IGTIFISSLK  60
   61 MLVVPLVFIS LVCGTCSLSE PSKLGRLGGK TLAFYLFTTA IALILAIVSA VLVHPGNASL 120
  121 ASEKMEYTAK EAPSLSSVLI NIVPTNPMQA MSEGNMLQII IFAVIFGFAI AHIGERGKRV 180
  181 AALFEDLNEV IMRVVTLIMQ LAPYGVFALM AKLALTLGLG TFESVVKYFF VVLVVLLIHA 240
  241 FIVYPTLLKL FSGLNPLIFI RKMRDVQLFA FSTASSNATL PITIEASEHR LGVDNKIASF 300
  301 TLPLGATINM DGTAIMQGVA TVFIAQVFGI ELTITDYAAV VVTATLASIG TAGVPGVGLI 360
  361 MLAMVLNQVG LPVEGIALII GVDRLLDMVR TAVNVTGDCV ATVVIAKSEG EFNETVFNNT 420
  421 QAGKVASNFD EQVHKVE

Type	Start	End	Confidence
Cytoplasmic	1	9	0.97
Transmembrane Helix	10	29	0.91
Non-Cytoplasmic	30	50	0.83
Transmembrane Helix	51	74	0.86
Cytoplasmic	75	91	0.84
Transmembrane Helix	92	113	0.94
Non-Cytoplasmic	114	155	0.95
Transmembrane Helix	156	174	0.96
Cytoplasmic	175	193	0.90
Transmembrane Helix	194	215	0.87
Non-Cytoplasmic	216	227	0.76
Transmembrane Helix	228	248	0.92
Cytoplasmic	249	306	0.57
Transmembrane Helix	307	334	0.65
Non-Cytoplasmic	335	336	0.32
Transmembrane Helix	337	371	0.70
Cytoplasmic	372	437	0.64