YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78685517, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	276	0.96
Transmembrane Helix	277	300	0.82
Non-Cytoplasmic	301	320	0.69
Transmembrane Helix	321	343	0.83
Cytoplasmic	344	349	0.71
Transmembrane Helix	350	372	0.84
Non-Cytoplasmic	373	392	0.83
Transmembrane Helix	393	414	0.89
Cytoplasmic	415	423	0.82
Transmembrane Helix	424	447	0.86
Non-Cytoplasmic	448	454	0.86
Transmembrane Helix	455	477	0.89
Cytoplasmic	478	510	0.96
Transmembrane Helix	511	533	0.86
Non-Cytoplasmic	534	665	0.94
Transmembrane Helix	666	688	0.86
Cytoplasmic	689	697	0.74
Transmembrane Helix	698	718	0.91
Non-Cytoplasmic	719	725	0.79
Transmembrane Helix	726	745	0.94
Cytoplasmic	746	764	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKQFHCVTV GNPNAGKSTL FNALTGANQQ VGNWSGVTVE KKTGHFTLNG ADVYLTDLPG  60
   61 IYDLLPAGNS CDCSLDEQIA QQYLAEQRVD GIINLVDATN IERHLYLTAQ LRELSIPMVV 120
  121 VLNKIDAAIK RGIRVDLKKM SQELGCPVIG VCSRDPADVA KVQAQVLDLL QGRVSEAPLI 180
  181 LDYDEQIEAG VQLLCSKDPN LSRGRALAML GNGSGCGSCK NAELQDEVNT CTQQIAQQGH 240
  241 DIEVLVATTR FNFVERVFQG SVKADGFLTL SDKLDKLVLH PVLGIPVFLF VMYLMFMFSI 300
  301 NIGSAFIDFF DVFVGALLVD HFGALLGNIG APAWLVTILA GGVGQGIQTV STFIPVIAAL 360
  361 FLGLSILESS GYMARAAFVV DGLMRRIGLP GKAFVPMIVG FGCSVPAIMA TRTLGSERER 420
  421 IVTGMMAPFM SCGARLPVYA LFAAAFFPDS GQNLVFLLYV IGIFAAIGTG LLLRSTLLPG 480
  481 TSSAVVMELP SYELPKFKAV MVRTGKRTKS FILGAGKTIV LVVTLLNFIN AIGVDGTFGH 540
  541 EDSQASLLSV ASQKVTPIFA PMGIEQDNWP ATVGIITGIF AKEAVVGTLN SLYTNAAHDD 600
  601 GELTPLADSF SEALATIPAN LFGLDLEDPL KLSVGDVSST DVAAEAQGVA TSTFSALQSG 660
  661 FTTTVAAFAY LLFILLYTPC VAAMGALVNE FGTRWATFAA TWTFSLAYGS ATIAYQAATF 720
  721 GAHPLQSSLW IGFFLVALVV FYLWLKRKGR RTQQIIPGVR IITE