YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78684693, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPQPKSDNN APAAQPIPQE AFDWYDEYAH GIIDRREFMA RLAGLVALGF TMTTLTGALM  60
   61 PNYALAEQVS FNDPSIQASY VKFPSPEGYG EGRGYLVMPA SMLIPGKEAG DSKTLDPTKK 120
  121 APVVLVVHEN RGLNPYIEDV ARRLAAKGYI AFAPDALYSL GGYPGNDDAG RAMQASLDRA 180
  181 KIEQDFIAAA RFLKAHPQSN GKLGAVGFCF GGYIVNMLAA SIPDELAAGV PFYGTPAATE 240
  241 LRSRVEGPLM LQFAALDQRI NDTWGEYETQ LKANKAEYIA YLYPNVNHGF HNDSTARYDE 300
  301 PTAELAWART LDFFGKYLQG

Type	Start	End	Confidence
Cytoplasmic	1	41	0.93
Transmembrane Helix	42	65	0.84
Non-Cytoplasmic	66	320	0.97