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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|117921856, gi...
Protein type: Transmembrane
Type Confidence: 0.59
Topology Confidence: 0.53
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKSKLRTFR SKILSHIALP LILIMTAVYG INAWFNYLSA ERKLYDSLAQ ESNHSAYRLQ  60
   61 LLIEHAQANT QGVADFIGFI SNKEGINDSE KIKRVLTNRI ERNPDFYGSA VAFKPYTFPD 120
  121 KKLFSPYVYR DGNNFHYLDI GAEGYDYTDG SWDWWSKAIN QPGGYWSKAY FDEGAGNTLM 180
  181 VTYSVPFGPE NDYFGVATVD LALDKLPEQL GVQPSQLVVL DDQGRLIFHS DKEKVLAVTS 240
  241 AEWLDRNTRR NSDFWTLLDK GLNGQARFID DKSTVYLASV ASVAKLKWRV IVMVPEHQLF 300
  301 ATLLDDVASV VLNLSLLTLL LLLTCYIAAK RLTRPLEALE SGILAFGQGK AQQLAIPKGA 360
  361 VSEIVTLSST FNQMAELLGE REQAILDSRG NRFARLIDGM SDKSFYCSLD PSGQLAQVSE 420
  421 GVTKVLGMSP ELLKRKYQRL FTANPLNEKN WEYTDLALKG ENVPSHQVEL LDASGHPRML 480
  481 DLFMLPLVSD TGELMSVEML FTDVTEQFSA ATWSNAVLEA APEAMLIVEQ MGSIVFTNTR 540
  541 CQILFGYDAN SMLGLQVESL LPEAMRSNHA RDRLQFLREG RDRPMANARH VRALKADGGE 600
  601 FVAEIALSIL PADHEGRRQV AASIRDMTQK LAVEQKIRDS ELRFRGLVTN IPGAVYRTRI 660
  661 GDVWVMEYVS DNIADITGFA ASQFIENRQR TFASLILEED RELCHQHIDR ALAQQETFEV 720
  721 EYRIRHRDGS IRWVHEKGKA SYTEEGFPLW FDGSIDDITE SKLAMVELEA SRLQLTNITE 780
  781 SIPCTVYQLR WVSPADHTFT FLSGAAFHML GLHREDLLKD FNIIAERIFD EERPEVVRAL 840
  841 AGKSEDKLQW VREFRYRHPN GSIRWMEAGA SGHYNDDGAI IWNGYVMDIT ERKAIEEELA 900
  901 VSEAHFKALF DGSTIGIVNV DAKGVILDCN DQYCEDMGQT RESLCGVPIF DVLSLQDKET 960
  961 AKAQFRELAE GKVDHYRGER SFIRPNGEPL WMTVNVSALF DSQKQFESAV VSMVDMTELK1020
 1021 LLSDELLVAK EEADAASKAK GDFLANMSHE IRTPMNAIIG MSQLCLQTAL DKKQKNYVEK1080
 1081 IERASKSLLS IINDILDFSK IEAGKLDIES VPFQLDTMLE DLSDMFSEKA AHKQLELLFA1140
 1141 VAPNVPRHLF GDSLRLGQVL INLMNNAIKF TERGEVLLSL NLVEQQNDDV VLRFSVRDSG1200
 1201 IGLTADQQAK LFKSFSQADT STTRKYGGTG LGLAICKQLV ELMGGTIGVE SQFGHGSTFY1260
 1261 FTVKLQISSG QKLTVAQELE GMPILVADDN ATARDIMRTT LESMGFRVDT VRSGEEAVTR1320
 1321 CIQQEYAVAL IDWKMPNLDG IETAKQIKQQ AKKAPRILMV SAHANQDFLS QIEELGLAGY1380
 1381 ISKPISASRL LDGIINSLGR AGVLPVRRQS ESIDPKLLLP LKGKRILLVE DNEMNLEVAT1440
 1441 EFLEQVGIIL SIATNGQIAL DKLEQQSFDL VLMDCQMPVM DGYQATQALR KRPELTELPV1500
 1501 VAMTANAMAG DKEMCLRAGM NDHIAKPIEV NLLYQTLLKY LGGSASLVDN TEPSQLVDIP1560
 1561 VKPINLDSES VVKWPEHPEL DIDRGLQLVQ NSTRLYQRSF DRFVTSQRNV VDLINKALAN1620
 1621 DKRDDAVRMA HTLKGLAGNL SSSKLVELAR QLELHLSEKS EYQTELDQIQ ALVASICDAI1680
 1681 ERVKPQFEES TTSTSEQLSP EALVTALKQL RQSLEDADSD AVAQIDALKP QVSSKLWLQL1740
 1741 SPALTMINQY QFDEAVDLID EVLAELT

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