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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|78684374, gi|...
Protein type: Transmembrane
Type Confidence: 0.59
Topology Confidence: 0.52
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLTRKTDQV VEPKVPALGL NRRQFLKSAG LATGGIAAAS MLGTGMMRKA QAQEHIPHNA  60
   61 PTEVKRTICS HCAVGCGIYA EVQNGVWTGQ EPAFDHPFNQ GGHCAKGAAL REHGHGEKRL 120
  121 KYPMKLEGGK WKKISWEQAI NEVGDKMTAI RQESGPDSIY FMGSAKFSNE QAYLYRKLAA 180
  181 LWGTNNVDHS ARICHSTTVA GVANTWGYGA QTNSLNDIRN SKCIMFVGSN PSEAHPVAMQ 240
  241 HILVAKERGA KIIVVDPRFT RTAAKSDEYV HIRPGTDIPF IYGLLWHIFE NGWEDKEFIN 300
  301 QRVYGMERIR DEVKKYTPEE VENVAGVPKA QMYRIAKMLA ETKPGTIVWC MGGTQHHVGN 360
  361 ANTRSYCILQ LALGNMGVSG GGTNIFRGHD NVQGATDFGL LFDNLPGYYG LTSGAWAHWS 420
  421 GVWDLDPKWV AGRFDQGEYL GQTPQTSTGI PCSRWHDGVL EDKTKIAQKD NIRLAFFWGQ 480
  481 SVNTETRGRE VREALNKLDT VVVVDPIPTM AGVMHQRKDG VYLLPAATQF ETYGSVSATN 540
  541 RSIQWRSKVI EPLFESLPDH VIMYKLAKKL GIEKEFCKHI QVNGEEPLIE DVTREFNKGM 600
  601 WTVGYTGQSP ERLKMHQENW GTFDVNSLTA PGGPAKGEVY GLPWPCWGTP EMKHPGTQIL 660
  661 YDQSKEVKDG GGTFRARYGV EHNGVSILAD GSFSKGSEIQ DGYPEFTADM LKQLGWWDDL 720
  721 TEDEKKLAEG KNWKTDLSGG IQRVAIKHGC IPFGNAKARC IVWTFPDDIP LHREPLYTPR 780
  781 RDLVAKYPTY EDRMVARLPT LYKSIQDKDF TQGFPLTLTS GRLVEYEGGG EESRSNPWLA 840
  841 ELQQEMFIEM NPADAADRGI RDGDNVFVHS PEGAKITVKA MVTPRVVPGE CFMPYHFAGI 900
  901 FEGENLAKNY PEGTVPYVQG ESANTILTYG YDVVTQMQET KSSLCQVSKA 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle