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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|78684236, gi|...
Protein type: Transmembrane
Type Confidence: 0.88
Topology Confidence: 0.80
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVFGILSGR LDKAIRHIFT TIGGQRQSVK PSVRVISSLG YFACLLSLSA SLLWLWPNTI  60
   61 AANEMSLQEH RQALSQLTPA QKLAHSHRVS MILEADRPFW NQVAKFAKIA AMDLNIQLDI 120
  121 VYGDGTPETL LALGHEAIDN AVAGIIFVPI LGMGQDLLVE AKRNNIPVVT INSEFAQSSL 180
  181 ALRTQNPNWV GKVTMNSSNL GQNLLEKMFE EEASSEQMNL LLLAGSKDNL DVQKRTAELK 240
  241 NAVSRQFANA KFKVVNTDWS ASAARAAYLK AIQQDPNINT VIAMNTTMAM AVTHEAEADT 300
  301 SRPMPHIGSL SWNHQLAQGI QKGTVAAGVG GVEFQGAFGL VLLFDYLNGV DTRAKGFEFQ 360
  361 VLPLIISPNN YNDYYELLDF DSLQPDFSRV SLALNTNLFL VDFRLGSLIP NMDVHRFMTQ 420
  421 LSVEERAFIN NNPIVKVGID PHSAPIDFID ENGIHRGMMA DYLAEISRVV PLIFQTYNEG 480
  481 SWQQAIDEFK RHDVDMLSLA SANAGREQWM LFTDAINQYP PVIVTHVDGE HPSSLEQLKG 540
  541 KSVSVVSGDV TQTQLLEDYP EIVLIPFENL EQALMAVKQH QVDAAFVNFP STAYLLQSPQ 600
  601 FNRLQIVSAS DYRFGISMGV RKDWPELQSI LNKALAQIPQ DKVREIQHRW VNVQYELGLK 660
  661 KQQVFDWAVR IAVAVVLVLL MFSLRNRRLN KDIAQRIHTE EQLSLSMNKF QALFDSAVDA 720
  721 CVITDRQGVI IECNSALLSL LKYQHKHQLI GRRTLVYYPP HLGETDSETL FEQRLQTVLE 780
  781 QGQLRFEADF VTSMAEIVNV EVTLKRIELN GSLFVLGTYH DLSERKLMNA LLERERDLLK 840
  841 HVLGRSPIGV WICIEGVCRY VNEQITEMTG LQVGQSVYPI FAQPDDYRCH ISELDLSQDS 900
  901 TVFETQLFDC KGQRRDVLLT AYHTVQDGQN ANLCWALDIT DTKSIQDELA IAKDAAEAAN 960
  961 RAKSDFLANM SHEIRTPMNA ILGMSYLVLQ TELSSKQRDY VGKVHQAAGS LLGILNDILD1020
 1021 FSKIEAEKMD IECAVFDLDD VLSNLANVVS YKVEEKNMAF IFDLPPELPR YYHGDGLRLG1080
 1081 QILINYCNNA VKFSHNDSNV VLSCESKVHG EQVELTFCVE DFGIGIPEQK QGVLFGSFEQ1140
 1141 VDASTSREYG GTGLGLAICK RLAHLMGGEV WCESELGVGS RFYVRLTLDC ADTYDPNALF1200
 1201 DPLAGETAKL IGLHPRLDKL LTIHGVSANM QVESADVGTV IAQLKQSSTR QLLICDYSAF1260
 1261 VPELLEALAV NQASRMLLIG QLSDQDSLRQ LIENNDRVIS QTKPLTPIAI GNALLSLLGH1320
 1321 QSEDGRQVQQ DHSLHALKTQ LAGAEVLLVE DNQLNQELAV ELLRQAGINV TVANHGLEAI1380
 1381 ERVEQQYFDC VLMDCQMPVL DGYEATRRIR ELPQFANLPI LAMTANAMSG DIEKALAVGM1440
 1441 NDQITKPVHV KDLYTVMARW ITPKQRKSVP LVLKRSTHAQ DLPQLEGLSI QNGLSHCDHN1500
 1501 ESLYSHLLGL FINTSKTLLG QQQRAWQEEN ADELRLSLHT LKGVAANVGA MEISRLASEL1560
 1561 ELQCLTAKRS FTVELHEQLL ALQTELQCLV SGLEIWYQQN NSIKPEASFS DEALAAMWPQ1620
 1621 LEQSLLEYNT NALEWVNKLT HAPQLQGESG LLKQLKMDVE LFDFEQALVR LLTLKQAQQA1680
 1681 RATTCS

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