YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78684154, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	26	0.95
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	199	0.99
Transmembrane Helix	200	224	0.91
Cytoplasmic	225	245	0.80
Transmembrane Helix	246	268	0.87
Non-Cytoplasmic	269	279	0.78
Transmembrane Helix	280	300	0.96
Cytoplasmic	301	320	0.92
Transmembrane Helix	321	344	0.89
Non-Cytoplasmic	345	362	0.80
Transmembrane Helix	363	384	0.91
Cytoplasmic	385	396	0.80
Transmembrane Helix	397	418	0.88
Non-Cytoplasmic	419	424	0.63
Transmembrane Helix	425	441	0.77
Cytoplasmic	442	455	0.66
Transmembrane Helix	456	478	0.83
Non-Cytoplasmic	479	613	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKLLSFIFT ALLLLAPLTQ SSNAFANSFG FLKSEPELMP VDQAFAFDFK QEGNKVTLNW  60
   61 VIADGYYMYR DKLKFSVNGA ELGTIDLPKG KPHNDEYFGE QEVYYTYIDI PVGLKQADDN 120
  121 GTLTVTFMGC AEGKLCYPPT KRDVTLKAVA ANDGQIATGT DSSENSESAA TADAKQTSSV 180
  181 PSQPITQQDS LSQMLSNDSL LWTLVIFFGL GIGLALTPCV FPMYPILSGI IVGQGQKLST 240
  241 AKAFTLSMAY VQGMAITYSI LGLVVASAGM KYQAALQHPA VLIFLAILFF VLSLSMFGLY 300
  301 DLKLPSSWQE KMNSISNNQK GGNLVGVFLM GVISGLVASP CTTAPLSGAL VYVAQTGDLL 360
  361 QGFLALYVLS MGMGVPLLII GTSGGKLLPR AGAWMNIIKT VFGFLLIAVS IVMLGRIWTG 420
  421 VVSDVLWSLW GISFTGYLMH QNKLSAFNWK QTVRSVLLTL TLLASFSYGF QAVMGHFGFT 480
  481 HAPMGTVATT EQEHGFKRIK SIEDLDREIA AATAAGKPVM LDLYADWCVA CKEFEAITFK 540
  541 DAEVLVRMNK IVLLQADVTK SDAVDVALLE KYNVLGLPTL LMFNEQGEQR EDLRVTGFMG 600
  601 PKEFAAHLDH LVK