YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78386553, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPITILDLVL LAVMLISGLL AMVRGFMREI LSIAAWGAAA LVTLYAYQKL LPTAKTYFSS  60
   61 DTVASAVVIA GVFIGTLVIV SIITVRISDM ILDSRIGALD RTLGFLFGLA RGLLIVVVAY 120
  121 QFFIWLVPDK QRPDWVTAAK SRTVLQGTGD WLMALLPDDP ENTILKRFKK NKPEDDQTDA 180
  181 DQATPPAAEG SEGYPKNARD DLKKLIEGKP AKR

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.66
Transmembrane Helix	5	26	0.82
Cytoplasmic	27	29	0.65
Transmembrane Helix	30	51	0.79
Non-Cytoplasmic	52	62	0.75
Transmembrane Helix	63	85	0.92
Cytoplasmic	86	102	0.74
Transmembrane Helix	103	125	0.90
Non-Cytoplasmic	126	213	0.80