YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90425256, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.77
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAGTETFYE VIRRQGITRR SFVKFCSLTA TSLGLGPIGA TEIAQALETK PRVPVIWMHG  60
   61 LECTCCSESF IRSAHPLVKD AVLSMISLDY DDTIMAAAGH QAEAILQETR EKYKGQYILA 120
  121 VEGNPPLNED GMFCIDGGRP FVEKLKEMAE DSMAVIAWGA CASWGCVQAA KPNPTQATPI 180
  181 DKVIRNKPII KVPGCPPIAE VMTGVVTYIT TFGRLPELDR QGRPKMFYSQ RIHDKCYRRP 240
  241 HFDAGQFVEE WDDDAARKGY CLYKMGCKGP TTYSACSTVR WNGGVSFPIQ SGHGCIGCTE 300
  301 DNFWDNGSFY DRLTTIKQFG VEANADKIGA TVAGVVGTAI AAHAAVTTVR SMAKRRKENG 360
  361 GNGNGNKPND TSAG

Type	Start	End	Confidence
Cytoplasmic	1	20	0.62
Transmembrane Helix	21	41	0.57
Non-Cytoplasmic	42	374	0.92