YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90426021, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.46
Transmembrane Helix	6	25	0.86
Cytoplasmic	26	62	0.59
Transmembrane Helix	63	85	0.91
Non-Cytoplasmic	86	137	0.85
Transmembrane Helix	138	160	0.87
Cytoplasmic	161	176	0.84
Transmembrane Helix	177	195	0.95
Non-Cytoplasmic	196	254	0.86
Transmembrane Helix	255	275	0.91
Cytoplasmic	276	283	0.73
Transmembrane Helix	284	305	0.93
Non-Cytoplasmic	306	327	0.78
Transmembrane Helix	328	350	0.86
Cytoplasmic	351	356	0.62
Transmembrane Helix	357	376	0.72
Non-Cytoplasmic	377	380	0.63
Transmembrane Helix	381	402	0.89
Cytoplasmic	403	421	0.85
Transmembrane Helix	422	446	0.87
Non-Cytoplasmic	447	485	0.69
Transmembrane Helix	486	512	0.76
Cytoplasmic	513	526	0.50
Transmembrane Helix	527	552	0.86
Non-Cytoplasmic	553	567	0.56

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLIGWIQIA LYCAIVVALA KPLGWYMTRV FTGEWTPLSP LLRPVEAGLY WLGGVDAKRE  60
   61 QHWLTYTVAM LLFHVGGFLI LYAVLRLQAV LPFNPQEQSA VAPDLAFNTA ISFLTNTNWQ 120
  121 NYGGESTLSY LSQMLGLTTQ NFLSAATGIA LAVALIRGFA RSSMRTIGNF WVDVTRCVLY 180
  181 VLLPICVVYA LFLVWQGMPQ TLNAYVDATT LEGAKQTIAV GPVASQVAIK MLGTNGGGFF 240
  241 NANASHPFEN PTALSNFVQM LSIFALGAGF TNVFGRMVGN QRQGWAILGV MGVLFIAGVA 300
  301 ITYWAEASGT TGLNALRLAG GNMEGKEVRF GIVASSLFAV ITTAASCGAV NAMHDSFTAL 360
  361 GGMIPLINMQ LGEIIVGGVG AGLYGMLLFV VLAIFVAGLM VGRTPEYVGK KIEAREVKMA 420
  421 MLAILVLPLM YLGWTAVAVV LPSAVASIAN PGPHGFSEVL YAFTSATGNN GSAFGGLTGN 480
  481 TLFYNLTLAT SMLVGRFFMI VPAMALAGSL AAKKSIPASA GTLPTTGGLF IGLVVGVILI 540
  541 IGGLTFFPAL ALGPIVEHLA MTANTLF