YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LSPA_SHELP
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSSWKESGL RWYWVVVLVF VADQLSKQWV LANFDLRESI NLLPFFNFTY VRNYGAAFSF  60
   61 LNDAGGWQRW LFTLVAVGFS TLLTVWLRKQ PKGLWRLNLA YTLVIGGALG NLIDRLQHGF 120
  121 VVDFLDFYWK TSHFPAFNIA DSAICVGAGL IILDSFISER KPNGEDVAKG

Type	Start	End	Confidence
Cytoplasmic	1	9	0.90
Transmembrane Helix	10	26	0.91
Non-Cytoplasmic	27	66	0.89
Transmembrane Helix	67	87	0.93
Cytoplasmic	88	93	0.93
Transmembrane Helix	94	113	0.89
Non-Cytoplasmic	114	133	0.85
Transmembrane Helix	134	153	0.91
Cytoplasmic	154	170	0.86