YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|127513445, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	276	0.97
Transmembrane Helix	277	300	0.83
Non-Cytoplasmic	301	316	0.76
Transmembrane Helix	317	341	0.80
Cytoplasmic	342	349	0.68
Transmembrane Helix	350	372	0.85
Non-Cytoplasmic	373	392	0.84
Transmembrane Helix	393	414	0.89
Cytoplasmic	415	423	0.82
Transmembrane Helix	424	447	0.86
Non-Cytoplasmic	448	454	0.86
Transmembrane Helix	455	477	0.89
Cytoplasmic	478	510	0.96
Transmembrane Helix	511	532	0.90
Non-Cytoplasmic	533	665	0.95
Transmembrane Helix	666	688	0.88
Cytoplasmic	689	697	0.74
Transmembrane Helix	698	718	0.90
Non-Cytoplasmic	719	725	0.75
Transmembrane Helix	726	745	0.94
Cytoplasmic	746	764	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKQFHCVTV GNPNAGKSTL FNALTGANQQ VGNWSGVTVE KKTGAFTLND TQVLLTDLPG  60
   61 IYDLLPAGSS CDCSLDEQIA QQYLAEAQMD GIINLVDATN IERHLYLTVQ LRELGIPMVV 120
  121 VINKIDAAKA HGIEVDVDKM SQQLGCPVIA VCSRDMNDIK QVQAQVVDLL DGKVSEAPLV 180
  181 LDYDVEIEAG IKALFERDSQ LSRGRALAMM GNGLGCGQCK NGQMLSEVSQ CSERLAAQGK 240
  241 DIEIMVATTR FDFVQQVFNK SVKDSDQLTL SDRLDKLVLH PIAGVPVFLF VMYLMFMFSI 300
  301 NVGSAFIDFF DITAGALFVD HLGALMTNIG APAWLVTIVA GGMGQGIQTV ATFIPVIAAL 360
  361 FLALSVLEGS GYMARAAFVV DGLMRRIGLP GKAFVPMIVG FGCSVPAIMA TRTLGSERER 420
  421 IVTGMMAPFM SCGARLPVYA LFAAAFFPES GQNLVFLLYI IGVLAAVGTG LLLRSTLLPG 480
  481 SSSAVVMELP NYEKPKLKAV MARTGKRTKS FILGAGKTIV IVVTLLNFIN AIGVDGSFGH 540
  541 EDSSESVLSV ASQKVTPLFS PMGIEQDNWP ATVGIITGIF AKEAVVGTLN SLYSTASGED 600
  601 EALAPLSESF SEALATIPEN LFGIAPEDPL SISVGDIQTI ETASSELDVD TSTFSALQSG 660
  661 FSGVTAAFAY LLFILLYTPC VAAMGALVGE FGPRWATFAA TWTLGLAYGT ATVFYQAMTF 720
  721 AAHPLQSGLW IAFFLVALVV FYLWLKRKGQ RAQTIIPVIN VVTE