YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78360155, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTEPTLLRQ MVRCSSRIVQ CGLAVILSSI LVTPLLYRWI QSIKITSHSG PRLPALFITA  60
   61 PLHWPRLPNY SLYYEHFDEL SYRSALFLLR IMRLRDTNSM STEIKNYGDA QFSDMRAQVQ 120
  121 QANDEIDLRE LFSVIWQGKW LIIAITAVFA IGSVVFAIMQ PNIYKSEALL APASEEQGGG 180
  181 LSALASQFGG LASMAGINLG SGGGVDKTKM AIEVMKSRQF ASDFIKKHNL LPDLMAAEKW 240
  241 NMADNGIVYD NELYDVESKK WVREVKAPFK PEPSMQEAFK EFSKVVSVNS AKDTGMVTVS 300
  301 VEHLSPAVAQ QWVNWLVEDI NKVMKERDVA EAIRSSDFLN KQIAQTNVAD IRAILYKLIE 360
  361 EQAKTIMFAE VRDEYVFKTI DPALVPEEKA KPKRALICVL GTMLGGMLAV MLVLIKYFVR 420
  421 RES

Type	Start	End	Confidence
Cytoplasmic	1	17	0.77
Transmembrane Helix	18	40	0.84
Non-Cytoplasmic	41	49	0.63
Transmembrane Helix	50	64	0.41
Cytoplasmic	65	139	0.68
Transmembrane Helix	140	160	0.94
Non-Cytoplasmic	161	182	0.67
Transmembrane Helix	183	202	0.67
Cytoplasmic	203	395	0.96
Transmembrane Helix	396	418	0.92
Non-Cytoplasmic	419	423	0.88