YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78360186, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.55
Transmembrane Helix	9	42	0.71
Non-Cytoplasmic	43	54	0.65
Transmembrane Helix	55	75	0.89
Cytoplasmic	76	84	0.82
Transmembrane Helix	85	107	0.92
Non-Cytoplasmic	108	114	0.75
Transmembrane Helix	115	134	0.94
Cytoplasmic	135	147	0.89
Transmembrane Helix	148	169	0.90
Non-Cytoplasmic	170	179	0.75
Transmembrane Helix	180	202	0.87
Cytoplasmic	203	213	0.89
Transmembrane Helix	214	232	0.88
Non-Cytoplasmic	233	236	0.56
Transmembrane Helix	237	256	0.82
Cytoplasmic	257	269	0.75
Transmembrane Helix	270	288	0.88
Non-Cytoplasmic	289	294	0.60
Transmembrane Helix	295	314	0.93
Cytoplasmic	315	324	0.80
Transmembrane Helix	325	346	0.92
Non-Cytoplasmic	347	353	0.80
Transmembrane Helix	354	374	0.88
Cytoplasmic	375	649	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEHSILIKIL LMLMMAIVAI ALFRRAGLPA ILAYLITGVI SGPSVFNWFT QQQIHSVAEL  60
   61 GVVLLMFSLG LEFSLPRLWA MRRTVFGLGS AQVFVTAVLT MCISMLLGLN LSESIVVGSA 120
  121 IALSSTAIVL KLLNERGWLR RRHGELSVSV LLFQDLAVVP LLILMPLLAS DGEMLSWHQI 180
  181 LLAMGEGVLA FIALMAVGKW ALPKVFDEVA RSRSNELFVL STLVVALVTG ALTQWLGLSM 240
  241 ALGAFIAGML LGESQYKRQL EADIRPFRDL LMGLFFISIG MLLDFSLVIT FWWQVLLLVV 300
  301 AVIIAKALIV FGLLRAAKES FRTSVATAIS LAQVGEFSFV VLALAVNYQL LEITVSTKLV 360
  361 MVAVLSMAVA PWLVRHSVDI ARRLHGVKSV KQGGHETIPI PEQSSDLVLI LGYGRVGQTI 420
  421 ARFMKTEAIP YLVLDRDPTR VSEARRAGEP VYFGDVAKRA ILKQAQIKQA KLIVLTFTSS 480
  481 HVLDEVLPLC RQLAPEAKIL VRTRDDEGME ALEEAGASQV IPETLEGSLM LVSQVLYQCG 540
  541 VPLTRILKRL EYERRNHYQY LHGFFSGEET DFTLELLHAV ALPKGAQVVG QPLSAIPWDK 600
  601 LRVELRAVRR SGAEVESPEL DWLIRPGDIL IILGKPRRIE KAEHYLLQG