YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|127513558, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEYFSWALVA VFLIAAKEWG RIIDKRCNVT QWSFTLTIGI LLVALNLLVP TEEVWFKGQL  60
   61 HPVYLAITLI GAMWWVISLF LVLSYPKSAA LWGKSHMLKS MFGQLTLVPC FTALIALKAL 120
  121 STASMPYYGG ALVFLVMLTV WATDSGAYFA GKALGKHKLM PNVSPAKTVE GLLGGLVTTM 180
  181 VVVAGVMMVS PEQELGLVIG VTLFVALVSA LGDLSESMFK RVADIKDSGT ILPGHGGVLD 240
  241 RIDSLTAALP IFTLIYIAFW M

Type	Start	End	Confidence
Cytoplasmic	1	28	0.80
Transmembrane Helix	29	49	0.93
Non-Cytoplasmic	50	62	0.84
Transmembrane Helix	63	85	0.91
Cytoplasmic	86	100	0.89
Transmembrane Helix	101	120	0.93
Non-Cytoplasmic	121	127	0.76
Transmembrane Helix	128	150	0.91
Cytoplasmic	151	168	0.90
Transmembrane Helix	169	189	0.92
Non-Cytoplasmic	190	194	0.87
Transmembrane Helix	195	215	0.89
Cytoplasmic	216	238	0.87
Transmembrane Helix	239	260	0.77
Non-Cytoplasmic	261	261	0.83