YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78360297, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNLNKETVK NRGIYLLPNL FTTAGLFSGF YAVIASMNGH FEAAAIAIFV AMIFDGLDGR  60
   61 VARMTNTQSA FGAEYDSMAD MVSFGVAPAL IAYNWALADL GKVGWLAAFI YCAGAALRLA 120
  121 RFNTQVGVAD KRYFQGLASP AAAAIIAGAI WTGTYYEIEG QQVSILALLM TAGAGLLMVS 180
  181 NFRYYSFKDY DWRGRVNFMV ILALVGLFVV VSVQPATILF IVFSLYALSG PIYTIRTVKK 240
  241 LKVSHVVGDE NETDIDITQE TDESKPTEQD DSDADKKQ

Type	Start	End	Confidence
Cytoplasmic	1	13	0.94
Transmembrane Helix	14	35	0.92
Non-Cytoplasmic	36	40	0.83
Transmembrane Helix	41	61	0.87
Cytoplasmic	62	76	0.86
Transmembrane Helix	77	97	0.88
Non-Cytoplasmic	98	102	0.84
Transmembrane Helix	103	122	0.93
Cytoplasmic	123	132	0.94
Transmembrane Helix	133	155	0.90
Non-Cytoplasmic	156	162	0.87
Transmembrane Helix	163	185	0.90
Cytoplasmic	186	195	0.82
Transmembrane Helix	196	213	0.89
Non-Cytoplasmic	214	215	0.49
Transmembrane Helix	216	235	0.66
Cytoplasmic	236	278	0.53