YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|126637988, gi...
Protein type:	Transmembrane
Type Confidence:	0.74
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTHAALYQQ GQARLEELRR LAPRHAQTLQ DKMEEHGITR RDFMKWSAAV TAMLALPLPF  60
   61 STLVAEAAEL ADRVPLIWLH MAECTGCSES LVRADTPNLD SLIFDHVSLE YHETLMAAAG 120
  121 WQAEENLEHA LETYKGNYLL AVEGAIPTAN NGAFLTVGCK GHTGLEIIKH AAEGAAAIIS 180
  181 VGTCASFGGV QAAAPNPTGA KGVDKVVNKT VVNLGGCPPS EKNIVGTLMY FIMFGKLPAL 240
  241 DMFNRPKWAY GARVHDNCER RGRFDAGEFV EQFGDEGAKE GYCLYKVGCK GPYTYNNCPT 300
  301 ERFNHHTSWP VLAGHGCMGC SEPNFWDDMA DFEKPLGRQL LHGLDATADT VGAVILGATA 360
  361 VGIGAHAVAS VFANSKED

Type	Start	End	Confidence
Cytoplasmic	1	45	0.56
Transmembrane Helix	46	60	0.42
Non-Cytoplasmic	61	378	0.73