YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78366768, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.74
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLDRIIGTAS ANNWLFFCLF NNKFSGDIDS QRLLNMFRSV IAALLACLSY SAHAVVILQY  60
   61 HHVSEDTPKV TSVIPAQFRE QMSYLRENGF KVKPLTHVVE AIKQGRELAD KTVAITFDDG 120
  121 YQNIADTAHP ILKEFGYPYT IFISIDPIER KHKNVMSWAT LKRLSDEGVT LANHSWGHEH 180
  181 LIRRLHGEDE QTWLTRITEN LLATEAEIEA KTGQSVKMLA YPYGEYNTAI ETLVQKLGFV 240
  241 GFGQQSGAAG GYSSLTALPR FPVAGAYADL TSLKAKLYSL NMPVLALTPR NTQLPLGQWR 300
  301 PEMQVTLDMA DIVASQVMCF VQGQGAMKPS WESEDTFSIQ AVTDLPPGRS RYNCTAPSKA 360
  361 SGRYYWFSQA WVRPKNDGTW VKE

Type	Start	End	Confidence
Cytoplasmic	1	39	0.64
Transmembrane Helix	40	57	0.70
Non-Cytoplasmic	58	383	0.98