YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78361924, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.46
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSWFKRFLPR SAFSQTVLLI GSLLLVNQLV SYLSVAVYFI QPTYQQINQL IARQVNLLFV  60
   61 DGVDVGREHL SMVDALNAKV RDDSMEIYNL KDAREAGVDR AAYYSLLSAQ MSEHLGGKAE 120
  121 VRIAQGKEFE IWIRPPQAPS VWIKVPLTGF NEFGLSPLTL YLMVIGALSV AGGWWFARKQ 180
  181 NKPLKRLQKA AISVSRGDYP APLPPSGSTE IIEVTNAFNQ MSRSMQQLEQ DRALLMAGIS 240
  241 HDLRTPLTRI RLASEMMVEE DEYLKEGIVH DIEDMDAIIN QFIAYIRQDQ EANRELVQIN 300
  301 DLLQDIAQAE TNRDGEIVLA LNECPEIPMQ AVAVKRIISN LVENAFRYGN GWVQLSSSFD 360
  361 GRRVGFGVED NGPGIPSDQI PKLFQPFTQG DSARGSVGSG LGLAIIKRIV DRHQGQVVLT 420
  421 NRPEGGLHAQ VWLPLE

Type	Start	End	Confidence
Signal Peptide	1	31	0.50
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	157	0.95
Transmembrane Helix	158	177	0.91
Cytoplasmic	178	436	0.92