YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78361898, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.93
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVPVARKMT MNSLPGKQRG VALIVVLLIV AMIAIIATNI NSRNQISVRR TINLAQYDQA  60
   61 YWYAISAEEL AKKVLKQDLD DADEGKVHRQ QYWAQADVVF PAEQGEIGGR ISDLQACFNL 120
  121 NALAIETTEV ENGQPKLPLP AVQFKGLLVA LGMDDFSAER LTHTLKDYID EDTVASPFGA 180
  181 EDADYESRTV PYRAANTLMS HRSELRAVIG FSQEVYLKLA PYICVIPGYD RQVLNVNTIE 240
  241 VEQAALLAGM FDNKISVGEA ESIINQRPGD GYDSLDDFWS NGSISGLRQD KNLESSFSLK 300
  301 SQYFLLEAGA KVDSATFRMQ SVLRVGGNNQ LDVLTRQYGG QK

Type	Start	End	Confidence
Cytoplasmic	1	19	0.95
Transmembrane Helix	20	40	0.93
Non-Cytoplasmic	41	342	0.98