YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78365996, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSERLFIRLG RSAEQSCSWL VWSEQEQEII ASGELSDAQG LSTLTERAGN RPVDILVPAS  60
   61 AITLTSVQLP EKGQRQALKA LPFMLEETLA ENVDELHFVP GPRNGESLSV AVVAHEQMQT 120
  121 WLSWLSEAGI KARQLVPDCL ALPLQECQWA AMKFGPDYLL RTSTGSGVSL DASWFQAALP 180
  181 RLAEAQEETP ITLASYSDLD IQGVEVKPQP LDLPMLVLAK GILNAPLNLL SGIYTPKREY 240
  241 SKHLLLWRNA AIVILVALVL ALVNKGLNIH QLNVEREGLQ QQTGEIFKQV MGSSRMVNVR 300
  301 SQMESQLRTL QGAGGGMAFF TMLDDLAVGF DKVPELKPTS LRFDGGRNEL RMQITAKSYA 360
  361 QIEQFKELIS PHFQVDSGAM NSGEDEVTST LTLRSK

Type	Start	End	Confidence
Cytoplasmic	1	244	0.63
Transmembrane Helix	245	263	0.85
Non-Cytoplasmic	264	396	0.84